Courses taught
- Bioinformatics applied to transcriptomics analysis — MSc in Neurobiology, UNAM. Guest lecturer (2024); coordinator and professor (2025, 2026).
- Spatial transcriptomics tutorials — introduction to spatial sequencing (link), spot deconvolution (link), imaging-based spatial transcriptomics / MERFISH (link) and spatial transcriptomics class 12 (link).
- Basic neurobiology course: cellular neurobiology and neurodevelopment — INB-UNAM graduate program (2024, 2025), guest lecturer.
- Developmental Biology — Graduate program in Biochemical Sciences, UNAM (2024), guest lecturer.
- Bioinformatics Week 2024 (Semana de Bioinformática) — INB-LAVIS, organizer and instructor (40 h).
- Bulk RNA-seq tutorial — differential expression analysis of RNA-seq in
R. link
- 3rd Summer Retreat on Bioinformatics and Complex Networks (2024, Mineral de Pozos) — workshop speaker (single-cell transcriptomics).
- Single-cell RNA-seq tutorial — single-cell RNA-seq analysis in
R. link
- Teaching extended to undergraduates of the Genomic Sciences degree (LCG) at ENES Juriquilla.
Student mentoring
- Rocío Cortés Encarnación — MSc in Biomedicine (UAQ), co-advisor. In progress.
- Rafael López Téllez — Bachelor's thesis: "Multi-omic analysis of regeneration in the mollusc Deroceras laeve" (WGBS methylation data).
- José Edoardo Rincón Cruz — Biochemical Engineering (TecNM Tuxtla Gutiérrez), co-advisor of professional residency (2024). Graduated.
- Rodrigo Paniagua Meza — summer internship (27th Verano de la Ciencia, Región Centro, 2025).
Interested in joining? See the openings in the lab.
Tutorials
Tutorials tied to a specific course are listed under that course above. The ones below stand on their own.
Command-line / terminal
Introduction to the bash command line for bioinformatics. link
Designing ISH probes with command-line tools. link
Working in R with the Deroceras laeve genome sequences to obtain features such as CpG islands. link